Journal of Applied Ecology
○ Wiley
Preprints posted in the last 30 days, ranked by how well they match Journal of Applied Ecology's content profile, based on 35 papers previously published here. The average preprint has a 0.03% match score for this journal, so anything above that is already an above-average fit.
Cano, D.; Perez, A. J.; Martinez-Nunez, C.; Tarifa, R.; Salido, T.; Ruiz, C.; Guitierrez, J. E.; Alcantara, J. M.; Rey, P. J.
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Recovery debt (RD) quantifies the interim deficit of biodiversity and function during the recovery process after disturbance. Unlike typical recovery indices derived from data on experimental-control comparisons, RD further considers the target (reference) biodiversity level, modelling the rate at which it is approached over time. However, the application of the RD approach to active restoration has not been explicitly implemented to date. Here, we extend the RD framework to evaluate active ecological restoration in agricultural systems, defining the onset of recovery as the shift from intensive to wildlife-friendly management. We applied this approach to assess short-term pollinator recovery in 14 olive groves across a gradient of farming intensification and landscape complexity in southern Spain. Restoration actions included adopting low-intensity ground cover management and actively restoring field margins. At one, three, and five years post-restoration, we assessed community responses by quantifying bee abundance, species richness, plant-bee network properties, and flower visitation rates. Reference systems were defined by olive groves in complex landscapes with low-intensity herb cover management and organic farming practices. Following restoration, the RD of bee abundance decreased from 71% to 55%. We found no significant effects of pre-intervention agricultural management on RD. Instead, across sites, the reduction of the RD (i.e., recovery) of bee abundance, richness, network connectance and flower visitation rate was strongly mediated by the availability of high-quality semi-natural areas in the surrounding landscape and by the ecological contrast created by restoration interventions at both the farm and floral patch levels. RD for other network metrics showed no significant pattern of variation. Our study demonstrates that wildlife-friendly management and targeted habitat restoration can rapidly reduce recovery debt for bee abundance and function in permanent agroecosystems. However, the recovery of more complex interaction-network properties likely requires longer timescales.
Wadud, A. I.; Craveiro, J.; Erroi, S.; Alcobia, S.; Branco, M.; Bugalho, M. N.; Vaz, P. G.
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Regeneration failure is a bottleneck in Mediterranean oak woodlands. Cattle can hinder or promote recruitment, depending on grazing location, timing and intensity. Herbivory theory predicts that repeated defoliation and trampling deplete seedling reserves, whereas resprouting can extend survival; yet field studies rarely separate intensity from recency or combine long-run grazing records with individual fates and microhabitat/climate context. We test how management-driven heterogeneity shapes cork oak seedling survival and resprouting by combining 12 years of paddock-level grazing records with individual tracking of 8431 seedlings across 24 paddocks. Bayesian mixed-effects survival models related seedling lifespan to grazing history x pressure (moderate [≤]150; high >150 LSU ha-1 days yr-1) and to key covariates, including seedling height, resprouting status, shrub distance, cattle dung counts (as a proxy of very recent grazing), and 1-month SPEI (as recent water balance). Bayesianlogistic mixed models were then used to relate resprouting probability to grazing treatments. Survival was lower in grazed than ungrazed paddocks and declined along management gradients: median lifespan fell from 460 (moderate grazing) to 256 days (high), and from 460 (old grazing; two-year absence) to 199 days (recent). A two-year cattle absence increased survival under moderate pressure but was insufficient where pressure was high, indicating legacy effects and that recovery windows must scale with pressure. Resprouting dominated persistence: resprouters lived >5x longer than non-resprouters (2351 vs 460 days). Taller seedlings lived longer, and shrub proximity conferred a modest benefit. Climate modulated outcomes: wetter recent periods (higher SPEI) markedly boosted survival. Cattle reduced the odds of resprouting, with the strongest penalty under recent use. By disentangling grazing intensity from recency and linking both to seedling survival and resprouting, we show why recruitment falters under continuous, heavy grazing and when it can recover. Because drought intensifies cattle impacts, managers should combine moderate stocking rates with multi-year rest periods to rebuild oak bud banks and below-ground reserves; a two-year hiatus can help under moderate pressure but appears insufficient where pressure is high. Aligning rotational plans with drought outlooks and tracking simple field cues (seedling height, recent resprouting) offers a practical path to reconcile production with regeneration in Mediterranean wood-pastures. HighlightsO_LITwelve years of grazing records linked to 8431 cork oak seedling fates C_LIO_LIRecent grazing reduced survival and resprouting versus a two-year cattle absence C_LIO_LIHigh grazing shortened lifespan; two-year rest helped only under moderate pressure C_LIO_LIResprouting was the strongest survival correlate; resprouters lived over 5x longer C_LIO_LIWetter short-term water balance increased cork oak seedling longevity C_LI
Glover-Kapfer, P.; Fowles, G.; Dougan, G.; McCarthy, K.
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Wildlife crossing infrastructure is promoted to restore connectivity for fragmented populations, but its effectiveness at enabling natural recolonisation remains untested. We tested this using a spatially explicit agent-based model parameterised with GPS telemetry data from bobcats (Lynx rufus) in New Jersey, USA. By integrating movement behaviour, stochastic demography, habitat suitability, and traffic-dependent mortality risk, we simulated 50-year recolonisation dynamics across a highly urbanised landscape. Despite extensive unoccupied suitable habitat, natural recolonisation completely failed across all scenarios, with vehicle-induced mortality during dispersal acting as the primary limiting factor and turning the matrix into a demographic sink. Even an idealised mitigation scenario in which mortality at high-mortality crossings was reduced to zero failed to produce a self-sustaining population. Although dispersal increased, individuals at the recolonisation front remained too sparse to overcome the mate-finding Allee effect. Sensitivity analysis confirmed that the recolonisation-failure result is robust to {+/-}50% variation in per-crossing mortality and {+/-}25% variation in disperser survival. Restoring structural connectivity is not, in itself, a sufficient intervention for recovering low-density carnivore populations facing a high-mortality matrix. Instead disperser survival and local density at the recolonisation front are the rate-limiting determinants. In such systems translocation rather than crossing-structure investment is more likely to result in recolonisation success.
Barnett, K. M.; McMahon, T. A.; Shepack, A. D.; Buelow, H. N.; Barkley, Z.; Belsare, A. V.; Risin, M.; Milloway, O.; Carozza, J.; Beasley, J.; Hobart, B.; Moss, W. E.; McDevitt-Galles, T.; Detmering, S.; Hilgendorff, B. A.; Nordheim, C. L.; Calhoun, D. M.; Rohr, J. R.; Johnson, P. T. J.; Civitello, D. J.
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Wildlife vaccination could become a powerful strategy to mitigate disease-induced biodiversity losses, yet many vaccines for wildlife diseases provide only limited protection. Notably, tools to control the fungal pathogen Batrachochytrium dendrobatidis (Bd) are urgently needed for amphibian conservation. Laboratory experiments have demonstrated that prophylactic exposure to Bd metabolites increases host resistance, significantly reducing infection intensity in amphibians subsequently challenged with live Bd. Because Bd metabolites are non-infectious and applied topically, this treatment has potential to be administered to waterbodies to vaccinate and protect amphibians. We developed an agent-based model that indicated imperfect vaccination could reduce or amplify Bd infections at the population level, depending on degree of enhanced resistance or tolerance. Utilizing a Before-After-Control-Impact design with ten years of data, we conducted an ecosystem-level trial where we applied low levels of Bd metabolites or a sham control treatment to ponds in California and subsequently quantified Bd prevalence and infection intensity in metamorphosing Pacific chorus frogs (Pseudacris regilla). Unexpectedly, infection intensity was significantly greater in treated ponds relative to control ponds following metabolite addition. Additional model simulations indicated that this could occur via two mechanisms: (1) if treatment greatly increased tolerance alone or in combination with smaller increases in resistance, or (2) if a deleterious environmental interaction caused the treatment to increase susceptibility, rather than promote resistance. Future research is needed to determine whether tolerance or environmental factors drove heightened Bd infection intensities in this field trial to identify contexts in which this treatment can be used as a conservation tool. Significance statementAlthough wildlife vaccination is increasingly explored as a strategy to mitigate disease-induced population declines, many available vaccines provide limited protection, requiring careful consideration to design successful conservation campaigns. Here, we use both an eco-epidemiological model and field manipulation experiment to assess the effectiveness of an imperfect prophylactic treatment (akin to a prototype vaccine) for chytridiomycosis, a disease implicated in the massive decline of amphibian biodiversity worldwide. We unexpectedly found that prophylaxis-treated ponds had higher pathogen loads relative to control populations and models suggest this could result from enhanced tolerance or an adverse environmental interaction.
Madden, J. R.; Sage, R. B.; Wilde, J. A.
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Large-scale annual releases of pheasants Phasianus colchicus and their subsequent management for recreational shooting create various ecological impacts in the UK. While effects at release sites are fairly well understood, dispersing birds may influence areas farther away. If they enter ecologically important but sensitive protected areas (PAs), any negative impacts could be especially harmful. Using tracking data, from 766 birds across 10 sites, we estimated survival and dispersal of released pheasants and applied these patterns to gamebird release records near English PAs to gauge intrusion risk. Of 2,885 registered release sites, just over half lay within 2 km of a PA. A large number of shoots release relatively few birds while a small number release many birds. Thus, numbers expected to enter a particular PA likely depend both on the size of releases and proximity to the PA. We estimate that, at a national level, a maximum of between 525,000 and 784,000 pheasants might be found within PAs very soon after release, representing around 1.7% of all the pheasants released annually. This number declines over the months after release until in February, we estimate that there are between 131,000 and 196,000 pheasants (0.4% of the total release) might be found within PAs. The critical metric by which ecological damage might occur is their density within PAs. Mean densities soon after release averaged 12.0 birds/ha in PAs within 250 m of release sites. This density declined markedly both in time (as birds died) and space (as they moved further from the pen as potential areas increased). By November, densities in PAs 500-1000m from release sites peaked at 0.5 birds/ha, falling to 0.16 birds/ha in February. These estimated densities are around two orders of magnitude lower than those known to cause strong, lasting impacts within release pens. The results are subject to assumptions about movement behaviour, game management and bias in registration. Despite these constraints, considerable local variation exists, with a minority of high-volume release sites very near PAs posing the greatest potential ecological risk.
Wilde, J. A.; Ozsanlav-Harris, L.; Madden, J.
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The release of tens of millions of common pheasants (Phasianus colchicus) across the UK for shooting may pose an ecological risk to native species and sensitive habitats, particularly if the birds move into protected areas (PAs) such as Special Areas of Conservation (SAC), Special Protection Areas (SPA), and Sites of Special Scientific Interest (SSSI). The extent of this ecological risk depends on the abundance of pheasants in these sensitive sites, especially if they are attracted there after the shooting season when game management efforts to retain the birds cease. We used relative pheasant abundance measures derived from British Trust for Ornithology bird atlas data from 3793 2km tetrads across four English counties (Berkshire, Cornwall, Devon, and Hertfordshire) to determine if pheasants preferentially disperse into or reside in areas with greater PA coverage. We analysed relative abundance in both the winter shooting season and the breeding season using a Bayesian occupancy-abundance model, controlling for habitat type and diversity. Our results showed a strong influence of habitat on pheasant abundance, consistent with known habitat preferences. However, we found no evidence of a relationship between relative pheasant abundance and the proportion of ecologically relevant PA coverage in a tetrad. This lack of a relationship was consistent across all four counties and across both the winter and breeding seasons. Our finding suggests that common pheasants do not preferentially disperse into or reside in protected areas compared to surrounding, unprotected land, suggesting that the ecological impacts caused by released pheasants are no more likely to occur in protected areas than in non-protected areas.
Ritson, J. P.; Bell, B.; Worrall, F.; Evans, M.; Lindsay, R.; Evans, C.
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O_LICalluna vulgaris is often managed in the UK by rotational burning, but this practice has recently been banned on peat with depth greater than 30-40 cm. It is unclear how then to manage the large areas of Calluna on blanket bogs used for sport shooting because without managed burning, fuel loads and wildfire risk will increase as the Calluna ages within the artificially narrow age distributions created by burn management. C_LIO_LIWe developed a model of Calluna mortality and management to understand duration and persistence of post-management effects. This allows us to assess how long it will take to reach a more natural age structure which would allow increased diversity if management ceases. C_LIO_LIOur results show that management effects persist for around 50 years depending on site-specific mortality rates. Active management may therefore be needed either to mitigate the elevated risk of severe wildfire or to speed up this transition. C_LIO_LISome studies have employed, as unmanaged analogues, Calluna stands that were last managed <50 years ago, but such studies may have unintentionally biased their results by observing Calluna still in post-management recovery leading to an over-estimation of wildfire risk associated with more natural blanket bogs. C_LIO_LISynthesis and applications: with the banning of burning as a management tool for Calluna on deep peat, alternative management is now likely needed as our model shows it could take around 50 years for the Calluna to reach a more natural age distribution. Mowing can replicate some of the effects of managed burning but requires repeated intervention and may compress the peat surface from repeated machine tracking. Rewetting and Sphagnum reintroduction may offer a more sustainable management approach to lowering Calluna fuel loads and reducing severe wildfire risk by creating wetter sub-optimal conditions for Calluna growth and thereby altering the competitive balance between Sphagnum and Calluna. Further work is needed to assess the efficacy of rewetting in controlling fuel loads and how this varies with climate and local pressures. More broadly, this work highlights the need to quantify the persistence of past management regimes to understand ecological trajectories. C_LI
Ellis, M. B.; Lewis, H. M.; Cameron, T. C.
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There is an urgent need to gather data on harvest rates of waterbirds in Europe to assess the sustainability of hunting. Estimates of total waterbird harvest in the United Kingdom (UK) and the relative harvest of different huntable species come from two separate surveys, the Value of Shooting (PACEC 2014) and National Gamebag Census (NGC, Aebischer 2019), and these have been recently used to explore the likelihood of unsustainable harvests of wild waterbirds by UK hunters (Ellis and Cameron 2022; Madden et al., 2025). The reliability of these sustainability estimates depends on how representative the original surveys are of hunter behaviour and success. There are also 1-3 million released game-farm mallard (Anas platyrhynchos) that takes up considerable and unquantified proportions of the UK waterbird harvest. Here we explore uncertainties in the UK winter harvest of wild waterfowl by comparing estimates from the NGC dataset with those from the Crown Estate coastal hunting clubs, and a novel approach using analysis of social-media images (2019/20 to 2023/24). We explore the difference in species-specific harvest with and without the uncertainties in the number of released mallard and the total number of duck harvested in the UK. Waterbird harvest estimates differ markedly depending on the input dataset and whether released mallard are included in the analysis. Confidence intervals of each estimate are inflated by uncertainties in the number of released game-farm mallard contributing to, and the size of that national bag. Estimates extrapolated from social media suggest the national harvest of several species may be considerably larger than the corresponding NGC estimates (e.g. Teal *2.07 and gadwall *11.2), while mallard harvests away from formal shoots represented by NGC are significantly lower (*0.71). Excluding released mallard reduces the statistical estimate of total wild duck harvest by 56-63%, which would have biologically significant effects if realised.
Butikofer, L.; Silvestro, D.; Rubio Teso, L.; Molina, A.; Lara Romero, C.; Garcia Valdes, R.; Broenniman, O.; Iriondo, J. M.; Guisan, A.; Petitpierre, B.; Aubry, S.
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Despite substantial global commitments to expand protected-area networks, the strategic allocation of limited resources remains challenging. Spatial conservation planning helps identify priority regions that maximise conservation benefits per unit area. Yet, they also tend to neglect two fundamental aspects of conservation: climate-driven range shifts and the representation of environmentally distinct populations within species. Here, we propose a continental-scale conservation planning framework that explicitly accounts for both processes through novel routines implemented in the conservation planning software CAPTAIN. We apply this framework to European crop wild relatives (CWR), for which niche coverage is a focal priority, as it underpins their potential to support agricultural adaptation to future environmental stressors through breeding programs. Comparative analyses on a subset of 186 CWR associated with five focal crops show that accounting for range shifts and niche coverage leads to substantially different conservation priorities from those obtained with a baseline model based on current distributions only. These additions reduced the number of non-protected species by 64%, increased the average protected distribution range by 43%, increased mean niche coverage from 75.8% to 84.5% and reduced the number of species with less than half of their niche protected from 35 to 10. Applied to a more comprehensive checklist of 1,140 European CWRs, the final framework identifies continental-scale priority areas representing 93.5% of these taxa and includes 94.4% of its critically endangered species. Our results highlight the importance of incorporating both temporal dynamics and within-species environmental representation when designing conservation strategies under climate change. RepositoryThe repository will be made publicly accessible after publication at doi: https://10.5281/zenodo.19855597
Sokolov, N. A.; Navarro, I.
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Urban pollinator gardens can provide refugia and support diverse populations of native bees amid threats from habitat destruction, pesticides, and potential ecological pressures from the introduced honey bee (Apis mellifera (Linnaeus, 1748)). The University of California, Berkeley, maintained a native bee garden at the Oxford Tract research facility to study the biodiversity, phenology, and foraging habits of urban bees from 2003 to 2009. That garden was decommissioned, and a new garden was re-established in 2019. Using diversity observations from the early 2000s garden and non-lethal sampling techniques, we characterized plant-pollinator interactions between flowers and urban bees in the newer bee garden with a bipartite interaction network. Across 12 flower species, we observed two non-native pollinators, the honey bee (A. mellifera) and the alfalfa leafcutter (Megachile rotundata (Fabricius, 1793)), along with at least ten native bee species across three families (Apidae, Halictidae, Megachilidae). We found that, despite the garden being created for native bees, honey bees accounted for 84% of all pollination interactions. The most abundant native bees were sweat bees (Family: Halictidae). Generalist interactions dominated the network, as both honey and sweat bees foraged on most available flowers. Honey bees showed a significant positive correlation with floral abundance, visiting flowers with the highest number of inflorescences, whereas native bees did not show this preference. These results indicate that native bee garden stewardship could benefit from greater floral diversity, while avoiding the dominance of any single species with high floral abundance, thereby reducing the likelihood of direct competition with honey bees.
Messick, H.; Lichtenberg, E. M.
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QuestionsEcological monitoring, repeated collection of ecological data, is essential to document how ecosystems respond to change. In grasslands, different vegetation monitoring protocols are used across disciplines, making it difficult to address multiple management objectives or research questions. We asked four questions about how three common vegetation monitoring protocols compare. (1) How do the protocols differ in how they collect data? (2) How do the protocols differ in their utility? (3) In what ways do vegetation measurements quantitatively differ across protocols? (4) What are each protocols strengths? LocationThis study was conducted on working ranches in the Southern Great Plains with vegetation consisting mainly of native forbs and grasses. MethodsWe implemented three protocols at each site: (1) the Rangeland Analysis Platform (RAP), (2) the Grassland Effectiveness Monitoring (GEM) protocol, and (3) a typical pollinator ecology survey protocol. We qualitatively compared each protocols utility and quantitatively compared cover measurements that each produced. ResultsAll three protocols displayed positive associations within cover categories, but differed in actual cover measurements. The RAP protocol, which uses remote sensing, measured the highest total vegetation cover. The GEM protocol, a line-point intercept method, had more capability to capture fine-scale cover patterns. The GEM protocol measured the most bare ground while the Pollinator protocol measured more forb coverage. ConclusionFine-scale methods like the GEM protocol are most appropriate to address objectives that require capturing small patterns that would otherwise be overlooked with methods like quadrats or remote sensing. Remote sensing is advantageous when monitoring large areas or inaccessible land, but may over-estimate cover. The Pollinator protocol is best equipped to address questions regarding flower abundance and richness. Similarities among protocols can facilitate synergy across disciplines for more effective monitoring. We emphasize the importance of denoting a clear scale and scope of monitoring objectives before selecting methods.
Cavalcante, T.; Si-Moussi, S.; Tzivanopoulos, M.; Hoareau, M.; Thuiller, W.; Kujala, H.
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Effective conservation planning increasingly relies on species distribution models (SDMs) to guide where actions deliver the greatest biodiversity benefits through spatial conservation prioritization. However, SDMs are inherently uncertain, and this uncertainty propagates through prioritization processes, affecting the identification of priority areas and influencing conservation decisions. Here, we evaluate whether correcting SDM overprediction reduces uncertainty propagation into spatial conservation prioritization. Using two large European datasets of vertebrates and invertebrates, we compared unconstrained SDMs with models corrected for overprediction through a Bayesian integration of occurrences, expert range maps, and habitat suitability. We found that overprediction correction reduced spatial and performance uncertainty, with uncertainty strongly structured by model and algorithm choice and amplified when overprediction was not corrected. Although no single modelling adjustment fully eliminates uncertainty propagation from SDMs into prioritization, we demonstrate that overprediction correction consistently reduces it across datasets, taxa, and modelling approaches, highlighting its importance for robust conservation planning.
Owino, R. O.; Golding, J.; Sangale, E. L.; Ali, A. H.; Alston, J. M.
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Giraffes, unlike other large mammals, typically pose minimal risk to humans, their animals, and crops, so they are traditionally not involved in human-wildlife conflict. Tree crops, however, are expanding across Africa, resulting in crop raiding by giraffes and retaliatory snaring, poaching, and killing of giraffes in response. The dynamics of giraffe crop raiding, however, are poorly understood, making effective interventions difficult to implement. To better understand key factors for humans and giraffes that mediate crop raiding, we used a multi-method approach to estimate giraffe abundance and activity, understand farmers perceptions and decisions, and test countermeasures around Garissa Giraffe Sanctuary in eastern Kenya. We hypothesized that 1) giraffe farm invasion would occur in dry seasons, 2) farms growing mangoes would be more likely to be invaded, 3) reducing invasion with only physical barriers would be less effective than adding behavior-based countermeasures, 4) perceptions would match giraffe activity and 5) countermeasure adoption would be driven by cost. We found that invasion and crop raiding primarily occur during the dry season and are associated with mangoes. Farmers are using many countermeasures. Effective countermeasures target giraffe behavior combined with physical barriers. Countermeasures are most effective when negative associations with humans are reinforced. Floodlights and speakers that play predator calls both reduce invasion, but only if used consistently. Overall, farmers perceptions matched giraffe dynamics. Availability was the most important factor in farmers willingness to try a countermeasure. Our results suggest that conflict can be reduced and there is interest from farmers in doing so, but use of countermeasures should be consistently applied and supported by making necessary equipment and instructions available.
Glover-Kapfer, P.; Song, Q.; Erb, J.
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ContextAnimals balance resource acquisition with risk mitigation. These trade-offs are rarely uniform, being mediated by spatial scale, demographic traits, and environmental constraints. Understanding these divergent spatial behaviors is critical for management across human-dominated landscapes. ObjectivesWe investigated how sexual dimorphism and ontogeny interact with landscape structure to influence scale-dependent resource selection. Specifically, we sought to determine how these demographic factors mediate spatial trade-offs between optimal foraging habitats, top-down intraguild predation risk, and bottom-up severe winter weather. MethodsWe examined the spatial ecology of a solitary carnivore, the bobcat (Lynx rufus), across a heterogeneous, human-modified landscape in northern Minnesota, USA. Using spatial data derived from harvested adult and juvenile individuals, we evaluated multi-scale selection relative to land cover, structural ecotones, intraguild predator activity, and winter severity. ResultsHabitat selection was scale-dependent and partitioned demographically. Whereas bobcats universally selected for ecotones and avoided homogeneous open habitats at fine scales, responses to other features diverged by sex and age. Females actively avoided areas with high coyote activity and freezing temperatures; males exhibited high risk tolerance, apparently indifferent to coyote activity and tolerant of freezing temperatures. We identified a distinct ontogenetic spatial shift among females. Subordinate juveniles were competitively excluded from optimal natural ecotones, forcing them into riskier, anthropogenic agricultural edges. In contrast, adult females optimized foraging opportunities by selecting productive ecotones at the intersection of woody vegetation and semi-natural grasslands. ConclusionsOur findings demonstrate that habitat selection is not a static species-level trait, but instead a dynamic process resulting from the interaction between ontogeny, sex, and landscape heterogeneity. The reliance of vulnerable demographic groups on marginal or anthropogenic habitats highlights how human land-use changes can inadvertently produce ecological winners and losers within the same species. Consequently, landscape management and conservation planning for solitary carnivores must shift from broad, population-wide habitat prescriptions to strategies that explicitly accommodate the divergent spatial requirements of specific demographic cohorts.
Hirobe, K.; Senzaki, M.
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O_LIFear of humans can drive persistent changes in wildlife behavioural and life-history traits, with cascading effects on entire ecosystems. Human multimodal cues and pet cues may influence impact of such fear, yet no study has tested how wildlife fear responses change when human acoustic cues and pet visual and acoustic cues are added to human visual cues. Filling this gap is important for managing human and pet outdoor activities while conserving wildlife. C_LIO_LIHere, with dogs representing the pet, we tested the effects of human and dog cues on fear responses of wild sika deer (Cervus nippon yesoensis) in approximately 800 km2 area, northern Japan, using alert distance (AD) and flight initiation distance (FID). First, we measured AD/FID with an approaching surveyor alone and with additional cues. Then, we fitted linear mixed-effects models while controlling for key covariates. C_LIO_LIFrom analyses with 266 observations, AD was estimated at 80.0 m with the human visual cue alone, and dog barking increased AD by 18.4m. FID was estimated at 57.1 m with the human visual cue alone, and human voice and the dog decoy increased FID by 11.3m and by 8.5 m, respectively. C_LIO_LIThese results demonstrate that human multimodal cues and pet cues can increase prey fear responses. Our findings also suggest that dog walking may expose wildlife to simultaneous human and pet cues more consistently than predator co-occurrence typically does in nature. The increase in FID with human acoustic cues, in contrast to previous studies, suggests that animals may shift cue weighting depending on predator species, potentially using human voices to help identify the threat as human. C_LIO_LIPrevious studies show that multimodal predator cues increase prey fear responses, and our findings extend this flamework to fear responses towards humans. Our findings can inform more tolerant management of human recreation and pet walking in sensitive areas. Reducing human and pet cues through signage, guidance, and zoning may prevent flight and associated energy expenditure, whereas mitigating vigilance may require behavioural guidance and spacing between pet-walking visitors. Overall, shaping how humans and pets behave may be more practical than blanket restriction. C_LI
Bergmann, J.; Lachaise, T.; Barfuss, K. M.; Bretherick, E.; Matthus, E.; van Kleunen, M.; Rillig, M. C.
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O_LIPlants take up nutrients from the soil while investing in absorptive root surface or mycorrhizal partners. Root hairs - a major structure for nutrient uptake and cheap to build - increase the absorptive root surface. As such they are an important component of plant resource economics but largely neglected in root economic concepts so far. C_LIO_LIThis is mainly due to data scarcity, which we set out to overcome by measuring root-hair traits on 82 European grassland species in a greenhouse experiment. Using fluorescence and light microscopy, root-hair length and incidence was measured along with mycorrhizal colonization. C_LIO_LIWe found a phylogenetically conserved trade-off between plant investment into root hairs and mycorrhiza. A similar trade-off between root-hair incidence and mycorrhiza occurred at the intraspecific level, while patterns were heterogeneous among species. Plant species with high colonization rates showed the highest variability in root-hair incidence. C_LIO_LIWe conclude that plants vary along a gradient ranging from investment into root hairs as part of a "do-it-yourself" strategy to collaboration with mycorrhizal fungi while showing intraspecific variation in root-hair incidence. These findings demonstrate that root hairs play a fundamental role in fine-root trait variation and need to be considered when studying belowground plant economic strategies. C_LI
Iler, A. M.; CaraDonna, P. J.; Petry, W. K.
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Most plants require animal pollination to reproduce, prompting concern that pollinator declines immediately threaten plant populations. This concern is warranted if pollinator-mediated seed losses cause declines in plant population growth rates ({lambda}). However, demographic trade-offs might reduce the risk of population decline if seed loss improves performance elsewhere in the life cycle. We conducted a multi-year pollination manipulation on four species and measured how demographic vital rates and {lambda} responded. Seed responses did not predict net changes in {lambda}. Reduced pollination decreased seed production, but only caused a net decrease in {lambda} in one species; in the others, improved survival buffered {lambda}. Increased pollination boosted seed production, but at a cost to survival that caused a net reduction in {lambda} in three species. Our results highlight the importance of demographic trade-offs for understanding the impacts of pollinator declines on plant biodiversity and, more broadly, the population-level impacts of changing mutualisms.
Chowdhury, J.; Milne, N.; Wade, M.; Thuaux, B.; Green, P.; Last, I.; Senior, J.; Carnegie, A. J.; Anderson, I. C.; Turnbull, T.; Plett, K. L.; Plett, J. M.
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Early management decisions in operational forestry are critical for plantation success because it strongly influences seedling quality at planting. Beyond shaping seedling morphology, nursery inputs can also restructure root-associated fungal communities which has consequences for nutrient acquisition, stress tolerance and disease suppression after planting. In this study, we altered nutrient and fungicide inputs based on mycorrhizal ecological theory and quantified the effects of these treatments on key dimensions of the growth performance of radiata pine seedlings. In parallel, we profiled the root-associated mycobiome, assigning fungal taxa to functional guilds and summarizing their richness, diversity, relative abundance and community structure. Using a composite performance index that integrates the key morphological and health measures into a single response variable, together with conventional statistical models with machine learning approaches, we identified management practises that promote both plant performance and a favourable root fungal community and determined the consistent microbiome changes linked to overall quality of the seedlings. These results suggest that microbial feedback loops occur even in highly managed nursery conditions. More broadly, by combining a composite performance index with predictive modelling, we provide a practical way to test complex management combinations and identify microbiome features associated with high-quality planting stock.
Melanson, J. B.; Kelly, T. T.; Clermont, N.; Koch, J. B. U.; Kremen, C.
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O_LIAgricultural intensification can support the expansion of introduced species which are highly adapted to human-modified landscapes, but the mechanisms by which this occurs are often unclear. C_LIO_LIHere we investigate the spatial ecology of a rapidly expanding introduced bumble bee (Bombus impatiens) and a native congener (B. mixtus) in agricultural landscapes of southwestern British Columbia, Canada. We used microsatellite genotyping and spatially explicit capture-recapture models to compare the foraging distance of the two species, and fitted hierarchical models to compare their abundance, behaviour (nest searching vs foraging), and lineage survival as a function of landscape composition and configuration. C_LIO_LIWe found that B. impatiens had a broader foraging range than B. mixtus, and that its colony/worker abundance were positively associated with the surrounding area of residential gardens, but decreased relative to B. mixtus abundance in response to increasing seminatural area. In contrast, B. mixtus colony abundance decreased in landscapes with a greater area of intensively managed berry crops. C_LIO_LIWe observed fewer B. impatiens queens per survey in landscapes with more low-disturbance landcover, and hypothesize space use of this species could be shaped by concentration on potential nesting habitat. Consistent with this observation, nest searching behaviour was more common for B. impatiens queens, while B. mixtus queens were primarily observed foraging, suggesting these two species derive different value from agricultural landscapes during colony establishment. C_LIO_LIFinally, we found that the rate of lineage re-capture between 2022 colonies and 2023 spring queens was nearly 10-fold higher for B. impatiens than for B. mixtus, indicating a greater capacity of the introduced species to complete its life cycle in agro-natural landscape mosaics. C_LIO_LIOur results suggest that differences in spatial ecology may contribute to the differential success of these two species in human-modified landscapes, and provide insight into the mechanisms by which land-use change shapes community composition. C_LI O_FIG O_LINKSMALLFIG WIDTH=184 HEIGHT=200 SRC="FIGDIR/small/723627v1_ufig1.gif" ALT="Figure 1"> View larger version (62K): org.highwire.dtl.DTLVardef@1e72eacorg.highwire.dtl.DTLVardef@a958a0org.highwire.dtl.DTLVardef@1f970b6org.highwire.dtl.DTLVardef@156f522_HPS_FORMAT_FIGEXP M_FIG C_FIG Graphical abstract. Coloured diagrams of B. mixtus and B. impatiens are credited to Elaine Evans and the Xerces Society, with permission.
Sage, R. B.; Bealey, C.; Woodburn, M. I. A.; Werling, J.; Banks, A. N.; Abrahams, D.; Madden, J.
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The release and management of pheasants (Phasianus colchicus) in the UK for recreational shooting exerts a range of effects on the ecosystem into which they are released. We studied possible effect of nutrient deposition on epiphytic tree flora at 20 pheasant release sites distributed through England (18) and Wales (2) during winter and spring 2023/24. Sites were all Ancient Semi-natural Woodlands (ASNWs) and had substantial (600-8000 pheasants) in a single release pen. We measured N-sensitive and N-tolerant indicator bryophyte and lichen species on tree trunks near to the pen and then in plots along a transect 100m, 250m, 500m and 1km+ away from the pen. To achieve a gradient of pheasant use, the transects were located in the opposite direction to the game managed / shooting area. We recorded 1.9 times more coverage of N-tolerant lichens and bryophytes combined on selected tree species at the pen-edge compared to the control plots. The relationship showed a decline from the pen edge to 250m away but then stabilised. We also detected higher levels of coverage of N-sensitive tree flora at 100m and 250 m compared to the penedge plot. These measures were also higher at these mid distances compared to the 500m and 1000m plots. We suggest far plots were nearer wood edges and were affected by ambient inputs of aerial N from farmland and other external sources. The overall interpretation is that concentrations of pheasants in and around release pens for several months from late summer until early winter in ASNWs does affect the balance of N-sensitive and tolerant tree flora up to potentially 250m and this is a consideration when locating release pens in and near to sensitive woods.